STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107788953Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (589 aa)    
Predicted Functional Partners:
LOC107805711
Polygalacturonase-like.
     
 0.783
LOC107819629
Polygalacturonase-like.
  
  
 0.779
LOC107799308
Polygalacturonase-like.
  
  
 0.768
LOC107826142
Polygalacturonase-like.
  
  
 0.768
LOC107826144
Polygalacturonase-like.
  
  
 0.768
LOC107765303
Receptor-like cytosolic serine/threonine-protein kinase RBK1.
    
 0.764
LOC107768185
Receptor-like cytosolic serine/threonine-protein kinase RBK1.
    
 0.764
LOC107768541
Receptor-like cytosolic serine/threonine-protein kinase RBK1.
    
 0.764
LOC107810629
Receptor-like cytosolic serine/threonine-protein kinase RBK1.
    
 0.764
LOC107803162
SWR1-complex protein 4-like.
    
 
 0.762
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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