STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107789211Zinc finger protein 598-like. (922 aa)    
Predicted Functional Partners:
LOC107799042
E3 ubiquitin-protein ligase listerin-like.
    
 
 0.649
LOC107820607
E3 ubiquitin-protein ligase listerin-like.
    
 
 0.649
LOC107765328
40S ribosomal protein S20-2.
    
 
 0.567
LOC107803063
30S ribosomal protein S10, chloroplastic-like.
    
 
 0.567
LOC107817346
30S ribosomal protein S10, chloroplastic-like.
    
 
 0.567
LOC107832707
40S ribosomal protein S20-2-like.
    
 
 0.567
LOC107780640
40S ribosomal protein S10-1-like.
    
 
 0.557
LOC107797139
40S ribosomal protein S10-like.
    
 
 0.557
LOC107829891
40S ribosomal protein S10-1-like.
    
 
 0.557
LOC107764711
Activating signal cointegrator 1 complex subunit 2-like isoform X1.
    
 
 0.556
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.