STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107789463VAN3-binding protein-like. (229 aa)    
Predicted Functional Partners:
LOC107817942
Uncharacterized protein At1g04910-like.
  
     0.521
LOC107770415
Uncharacterized protein At1g04910-like.
  
     0.518
LOC107800832
Uncharacterized protein At1g04910-like.
  
     0.515
LOC107770817
Uncharacterized protein LOC107770817.
  
     0.509
LOC107784857
Uncharacterized protein LOC107784857.
  
     0.507
LOC107798388
Mediator of RNA polymerase II transcription subunit 33A-like isoform X1.
  
     0.504
LOC107825349
LOB domain-containing protein 40-like.
  
     0.504
LOC107798271
Uncharacterized protein LOC107798271.
  
     0.503
LOC107762917
LOB domain-containing protein 41-like.
  
     0.501
LOC107786607
LOB domain-containing protein 40-like.
  
     0.501
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.