STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107789537Uncharacterized protein LOC107789537. (395 aa)    
Predicted Functional Partners:
LOC107775991
UPF0481 protein At3g47200-like.
  
     0.491
LOC107821869
Double-stranded RNA-binding protein 6-like.
  
     0.487
LOC107769149
Uncharacterized protein LOC107769149.
  
     0.483
LOC107788234
Uncharacterized protein LOC107788234 isoform X1.
  
     0.482
LOC107784349
Uncharacterized protein LOC107784349.
  
     0.475
LOC107809494
Uncharacterized protein At1g65710-like.
  
     0.469
LOC107776816
Putative late blight resistance protein homolog R1A-3 isoform X1.
  
     0.467
LOC107809020
F-box/LRR-repeat protein At3g26922-like.
  
     0.466
LOC107784894
Uncharacterized protein LOC107784894.
  
     0.465
LOC107822983
Uncharacterized protein At1g65710-like.
  
     0.464
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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