LOC107789715 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107789715

AMP deaminase-like. (843 aa)

Predicted Functional Partners:

LOC107768980

0.981

LOC107811442

0.981

LOC107760672

0.974

LOC107775294

0.974

LOC107790330

0.962

LOC107806529

0.962

LOC107831395

0.960

LOC107762705

0.951

LOC107766315

0.951

LOC107788158

0.951

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107760672	LOC107762705	A0A1S3X2W7	A0A1S3X9F6	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.991
LOC107760672	LOC107766315	A0A1S3X2W7	A0A1S3XKP8	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.991
LOC107760672	LOC107768980	A0A1S3X2W7	A0A1S3XUL8	Inosine-5'-monophosphate dehydrogenase 2-like.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.962
LOC107760672	LOC107775294	A0A1S3X2W7	A0A1S3YES5	Inosine-5'-monophosphate dehydrogenase 2-like.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.900
LOC107760672	LOC107788158	A0A1S3X2W7	A0A1S3ZLP3	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.991
LOC107760672	LOC107789715	A0A1S3X2W7	A0A1S3ZRU6	Inosine-5'-monophosphate dehydrogenase 2-like.	AMP deaminase-like.	0.974
LOC107760672	LOC107790330	A0A1S3X2W7	Q5DKU9	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenosine kinase isoform 1S.	0.439
LOC107760672	LOC107806529	A0A1S3X2W7	Q5DKV0	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenosine kinase isoform 1T.	0.439
LOC107760672	LOC107811442	A0A1S3X2W7	A0A1S4BSS8	Inosine-5'-monophosphate dehydrogenase 2-like.	Hypoxanthine-guanine phosphoribosyltransferase-like.	0.962
LOC107760672	LOC107831395	A0A1S3X2W7	Q5DKU8	Inosine-5'-monophosphate dehydrogenase 2-like.	Adenosine kinase isoform 2S.	0.439
LOC107762705	LOC107760672	A0A1S3X9F6	A0A1S3X2W7	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Inosine-5'-monophosphate dehydrogenase 2-like.	0.991
LOC107762705	LOC107768980	A0A1S3X9F6	A0A1S3XUL8	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.963
LOC107762705	LOC107775294	A0A1S3X9F6	A0A1S3YES5	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.991
LOC107762705	LOC107789715	A0A1S3X9F6	A0A1S3ZRU6	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	AMP deaminase-like.	0.951
LOC107762705	LOC107790330	A0A1S3X9F6	Q5DKU9	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Adenosine kinase isoform 1S.	0.525
LOC107762705	LOC107806529	A0A1S3X9F6	Q5DKV0	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Adenosine kinase isoform 1T.	0.525
LOC107762705	LOC107811442	A0A1S3X9F6	A0A1S4BSS8	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Hypoxanthine-guanine phosphoribosyltransferase-like.	0.963
LOC107762705	LOC107831395	A0A1S3X9F6	Q5DKU8	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Adenosine kinase isoform 2S.	0.525
LOC107766315	LOC107760672	A0A1S3XKP8	A0A1S3X2W7	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Inosine-5'-monophosphate dehydrogenase 2-like.	0.991
LOC107766315	LOC107768980	A0A1S3XKP8	A0A1S3XUL8	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.963