LOC107789757 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107789757

Uncharacterized protein LOC107789757. (110 aa)

Predicted Functional Partners:

LOC107772320

0.592

LOC107808157

0.592

LOC107827419

0.592

LOC107832162

0.592

LOC107759320

0.550

LOC107761557

0.537

LOC107762762

0.537

LOC107764785

0.537

LOC107768497

0.537

LOC107791623

0.537

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759320	LOC107772320	A0A1S3WYI1	A0A1S3Y4Y1	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	0.549
LOC107759320	LOC107789757	A0A1S3WYI1	A0A1S3ZRZ3	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein LOC107789757.	0.550
LOC107759320	LOC107808157	A0A1S3WYI1	A0A1S4BGY8	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein LOC107808157.	0.549
LOC107759320	LOC107827419	A0A1S3WYI1	A0A1S4D9C7	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	0.549
LOC107759320	LOC107832162	A0A1S3WYI1	A0A1S4DPV3	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein LOC107832162.	0.549
LOC107761557	LOC107789757	A0A1S3X6C6	A0A1S3ZRZ3	Uncharacterized protein LOC107761557.	Uncharacterized protein LOC107789757.	0.537
LOC107762762	LOC107764785	A0A1S3X9P5	A0A1S3XGC5	Elongation factor 1-alpha-like.	Elongation factor 1-alpha-like.	0.425
LOC107762762	LOC107789757	A0A1S3X9P5	A0A1S3ZRZ3	Elongation factor 1-alpha-like.	Uncharacterized protein LOC107789757.	0.537
LOC107764785	LOC107762762	A0A1S3XGC5	A0A1S3X9P5	Elongation factor 1-alpha-like.	Elongation factor 1-alpha-like.	0.425
LOC107764785	LOC107789757	A0A1S3XGC5	A0A1S3ZRZ3	Elongation factor 1-alpha-like.	Uncharacterized protein LOC107789757.	0.537
LOC107768497	LOC107789757	A0A1S3XT35	A0A1S3ZRZ3	Elongation factor 1-alpha-like.	Uncharacterized protein LOC107789757.	0.537
LOC107772320	LOC107759320	A0A1S3Y4Y1	A0A1S3WYI1	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.549
LOC107772320	LOC107789757	A0A1S3Y4Y1	A0A1S3ZRZ3	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	Uncharacterized protein LOC107789757.	0.592
LOC107772320	LOC107808157	A0A1S3Y4Y1	A0A1S4BGY8	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	Uncharacterized protein LOC107808157.	0.490
LOC107772320	LOC107827419	A0A1S3Y4Y1	A0A1S4D9C7	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	0.482
LOC107772320	LOC107832162	A0A1S3Y4Y1	A0A1S4DPV3	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	Uncharacterized protein LOC107832162.	0.490
LOC107789757	LOC107759320	A0A1S3ZRZ3	A0A1S3WYI1	Uncharacterized protein LOC107789757.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.550
LOC107789757	LOC107761557	A0A1S3ZRZ3	A0A1S3X6C6	Uncharacterized protein LOC107789757.	Uncharacterized protein LOC107761557.	0.537
LOC107789757	LOC107762762	A0A1S3ZRZ3	A0A1S3X9P5	Uncharacterized protein LOC107789757.	Elongation factor 1-alpha-like.	0.537
LOC107789757	LOC107764785	A0A1S3ZRZ3	A0A1S3XGC5	Uncharacterized protein LOC107789757.	Elongation factor 1-alpha-like.	0.537