STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107790311Rhamnogalacturonate lyase-like isoform X1. (670 aa)    
Predicted Functional Partners:
LOC107818008
Protein ARABIDILLO 1-like.
  
     0.492
LOC107774124
Uncharacterized protein LOC107774124.
  
     0.468
LOC107789946
Uncharacterized protein LOC107789946.
  
     0.468
LOC107829353
Uncharacterized protein LOC107829353.
  
     0.466
LOC107778840
Uncharacterized protein LOC107778840.
  
     0.465
LOC107794944
Probable galactinol--sucrose galactosyltransferase 1.
  
     0.465
LOC107782106
Pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like.
  
     0.460
LOC107782221
Probable U6 snRNA-associated Sm-like protein LSm4.
  
     0.452
LOC107801246
Phosphoglucan phosphatase LSF1, chloroplastic-like.
  
     0.452
LOC107766450
Phosphoglucan phosphatase LSF1, chloroplastic-like.
  
     0.449
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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