LOC107791849 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107791849

pre-rRNA-processing protein ESF1-like. (742 aa)

Predicted Functional Partners:

LOC107788613

0.995

LOC107807360

0.995

LOC107823761

0.995

LOC107831076

0.995

LOC107769877

0.992

LOC107777093

0.992

LOC107779177

0.992

LOC107811333

0.992

LOC107765637

0.980

LOC107798399

0.980

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107765637	LOC107769877	A0A1S3XIW1	A0A1S3XY25	U3 small nucleolar RNA-associated protein 18 homolog.	LOW QUALITY PROTEIN: nucleolar protein 6-like.	0.995
LOC107765637	LOC107777093	A0A1S3XIW1	A0A1S3YJZ5	U3 small nucleolar RNA-associated protein 18 homolog.	Nucleolar protein 6.	0.995
LOC107765637	LOC107779177	A0A1S3XIW1	A0A1S3YSN1	U3 small nucleolar RNA-associated protein 18 homolog.	Something about silencing protein 10-like isoform X1.	0.996
LOC107765637	LOC107788613	A0A1S3XIW1	A0A1S3ZMM2	U3 small nucleolar RNA-associated protein 18 homolog.	RNA helicase.	0.941
LOC107765637	LOC107791849	A0A1S3XIW1	A0A1S3ZYG5	U3 small nucleolar RNA-associated protein 18 homolog.	pre-rRNA-processing protein ESF1-like.	0.980
LOC107765637	LOC107798399	A0A1S3XIW1	A0A1S4AJI8	U3 small nucleolar RNA-associated protein 18 homolog.	U3 small nucleolar RNA-associated protein 18 homolog.	0.543
LOC107765637	LOC107807360	A0A1S3XIW1	A0A1S4BEC0	U3 small nucleolar RNA-associated protein 18 homolog.	U3 small nucleolar RNA-associated protein 6 homolog isoform X1.	0.997
LOC107765637	LOC107811333	A0A1S3XIW1	A0A1S4BS60	U3 small nucleolar RNA-associated protein 18 homolog.	Something about silencing protein 10-like isoform X1.	0.996
LOC107765637	LOC107823761	A0A1S3XIW1	A0A1S4CXU1	U3 small nucleolar RNA-associated protein 18 homolog.	U3 small nucleolar RNA-associated protein 6 homolog.	0.997
LOC107765637	LOC107831076	A0A1S3XIW1	A0A1S4DM87	U3 small nucleolar RNA-associated protein 18 homolog.	RNA helicase.	0.941
LOC107769877	LOC107765637	A0A1S3XY25	A0A1S3XIW1	LOW QUALITY PROTEIN: nucleolar protein 6-like.	U3 small nucleolar RNA-associated protein 18 homolog.	0.995
LOC107769877	LOC107777093	A0A1S3XY25	A0A1S3YJZ5	LOW QUALITY PROTEIN: nucleolar protein 6-like.	Nucleolar protein 6.	0.900
LOC107769877	LOC107779177	A0A1S3XY25	A0A1S3YSN1	LOW QUALITY PROTEIN: nucleolar protein 6-like.	Something about silencing protein 10-like isoform X1.	0.998
LOC107769877	LOC107788613	A0A1S3XY25	A0A1S3ZMM2	LOW QUALITY PROTEIN: nucleolar protein 6-like.	RNA helicase.	0.978
LOC107769877	LOC107791849	A0A1S3XY25	A0A1S3ZYG5	LOW QUALITY PROTEIN: nucleolar protein 6-like.	pre-rRNA-processing protein ESF1-like.	0.992
LOC107769877	LOC107798399	A0A1S3XY25	A0A1S4AJI8	LOW QUALITY PROTEIN: nucleolar protein 6-like.	U3 small nucleolar RNA-associated protein 18 homolog.	0.995
LOC107769877	LOC107807360	A0A1S3XY25	A0A1S4BEC0	LOW QUALITY PROTEIN: nucleolar protein 6-like.	U3 small nucleolar RNA-associated protein 6 homolog isoform X1.	0.999
LOC107769877	LOC107811333	A0A1S3XY25	A0A1S4BS60	LOW QUALITY PROTEIN: nucleolar protein 6-like.	Something about silencing protein 10-like isoform X1.	0.998
LOC107769877	LOC107823761	A0A1S3XY25	A0A1S4CXU1	LOW QUALITY PROTEIN: nucleolar protein 6-like.	U3 small nucleolar RNA-associated protein 6 homolog.	0.999
LOC107769877	LOC107831076	A0A1S3XY25	A0A1S4DM87	LOW QUALITY PROTEIN: nucleolar protein 6-like.	RNA helicase.	0.978