STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107792008Pectate lyase. (322 aa)    
Predicted Functional Partners:
LOC107764766
Polygalacturonase-like.
     
 0.792
LOC107780660
LOW QUALITY PROTEIN: polygalacturonase-2-like; Belongs to the glycosyl hydrolase 28 family.
     
 0.791
LOC107796563
Polygalacturonase-2-like.
     
 0.791
LOC107824130
Polygalacturonase-2-like.
     
 0.791
LOC107761604
Polygalacturonase-like.
     
 0.757
LOC107773351
Polygalacturonase-like.
     
 0.757
LOC107781693
Polygalacturonase-like.
     
 0.757
LOC107785349
Polygalacturonase-like.
     
 0.757
LOC107785770
Polygalacturonase-like.
     
 0.757
LOC107799308
Polygalacturonase-like.
     
 0.757
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.