LOC107792370 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107792370

Uncharacterized protein LOC107792370. (427 aa)

Predicted Functional Partners:

LOC107831871

0.458

LOC107769470

0.453

LOC107778985

0.453

LOC107774051

0.439

LOC107815098

0.439

LOC107773419

0.436

LOC107810447

0.435

LOC107823038

0.429

LOC107768131

0.427

LOC107768152

0.427

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107768131	LOC107768152	A0A1S3XRZ2	A0A1S3XS89	Calmodulin-binding protein 25-like.	Uncharacterized protein LOC107768152.	0.414
LOC107768131	LOC107773419	A0A1S3XRZ2	A0A1S3Y806	Calmodulin-binding protein 25-like.	Uncharacterized protein LOC107773419.	0.410
LOC107768131	LOC107792370	A0A1S3XRZ2	A0A1S4A0E8	Calmodulin-binding protein 25-like.	Uncharacterized protein LOC107792370.	0.427
LOC107768131	LOC107810447	A0A1S3XRZ2	A0A1S4BP92	Calmodulin-binding protein 25-like.	Protein FAF-like, chloroplastic.	0.489
LOC107768131	LOC107823038	A0A1S3XRZ2	A0A1S4CVF8	Calmodulin-binding protein 25-like.	Uncharacterized protein LOC107823038.	0.516
LOC107768152	LOC107768131	A0A1S3XS89	A0A1S3XRZ2	Uncharacterized protein LOC107768152.	Calmodulin-binding protein 25-like.	0.414
LOC107768152	LOC107792370	A0A1S3XS89	A0A1S4A0E8	Uncharacterized protein LOC107768152.	Uncharacterized protein LOC107792370.	0.427
LOC107769470	LOC107774051	A0A1S3XW60	A0A1S3Y9P9	NAC domain-containing protein 17-like.	Uncharacterized protein LOC107774051.	0.417
LOC107769470	LOC107792370	A0A1S3XW60	A0A1S4A0E8	NAC domain-containing protein 17-like.	Uncharacterized protein LOC107792370.	0.453
LOC107769470	LOC107815098	A0A1S3XW60	A0A1S4C4N8	NAC domain-containing protein 17-like.	Uncharacterized protein LOC107815098.	0.413
LOC107773419	LOC107768131	A0A1S3Y806	A0A1S3XRZ2	Uncharacterized protein LOC107773419.	Calmodulin-binding protein 25-like.	0.410
LOC107773419	LOC107792370	A0A1S3Y806	A0A1S4A0E8	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107792370.	0.436
LOC107773419	LOC107815098	A0A1S3Y806	A0A1S4C4N8	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107815098.	0.400
LOC107774051	LOC107769470	A0A1S3Y9P9	A0A1S3XW60	Uncharacterized protein LOC107774051.	NAC domain-containing protein 17-like.	0.417
LOC107774051	LOC107792370	A0A1S3Y9P9	A0A1S4A0E8	Uncharacterized protein LOC107774051.	Uncharacterized protein LOC107792370.	0.439
LOC107774051	LOC107823038	A0A1S3Y9P9	A0A1S4CVF8	Uncharacterized protein LOC107774051.	Uncharacterized protein LOC107823038.	0.413
LOC107774051	LOC107831871	A0A1S3Y9P9	A0A1S4DP08	Uncharacterized protein LOC107774051.	NAC domain-containing protein 17-like.	0.418
LOC107778985	LOC107792370	A0A1S3YS73	A0A1S4A0E8	Uncharacterized protein LOC107778985.	Uncharacterized protein LOC107792370.	0.453
LOC107792370	LOC107768131	A0A1S4A0E8	A0A1S3XRZ2	Uncharacterized protein LOC107792370.	Calmodulin-binding protein 25-like.	0.427
LOC107792370	LOC107768152	A0A1S4A0E8	A0A1S3XS89	Uncharacterized protein LOC107792370.	Uncharacterized protein LOC107768152.	0.427