STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107792958Heme oxygenase 1, chloroplastic-like. (278 aa)    
Predicted Functional Partners:
LOC107761635
Phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like.
     
 0.948
LOC107823317
Phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like.
     
 0.948
LOC107779891
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.944
LOC107832463
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.944
LOC107774460
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.943
LOC107817912
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.943
LOC107759791
Frataxin, mitochondrial-like isoform X1.
     
 0.937
LOC107795592
Frataxin, mitochondrial-like.
     
 0.937
LOC107780480
Protoheme IX farnesyltransferase, mitochondrial-like.
     
 0.910
LOC107829283
Protoheme IX farnesyltransferase, mitochondrial-like.
     
 0.910
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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