STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107793334Probable N-acetyltransferase HLS1. (412 aa)    
Predicted Functional Partners:
LOC107770079
Uncharacterized protein LOC107770079.
  
     0.506
LOC107818166
Uncharacterized protein LOC107818166.
  
     0.501
LOC107803327
Transcription repressor OFP6-like.
  
     0.499
LOC107763326
Auxin-responsive protein SAUR22-like.
  
     0.491
LOC107826594
Auxin-responsive protein SAUR21-like.
  
     0.490
LOC107819443
Transcription repressor OFP7-like.
  
     0.486
LOC107766027
Auxin-induced protein 6B-like.
  
     0.484
LOC107783912
Auxin-responsive protein SAUR21-like.
  
     0.484
LOC107805561
Auxin-induced protein 15A-like.
  
     0.483
LOC107810904
Auxin-responsive protein SAUR22-like.
  
     0.481
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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