LOC107793856 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107793856

LRR repeats and ubiquitin-like domain-containing protein At2g30105. (382 aa)

Predicted Functional Partners:

LOC107767678

0.499

LOC107802067

0.494

LOC107766900

0.486

LOC107773503

0.486

LOC107775696

0.484

LOC107764338

0.477

LOC107781362

0.477

LOC107824456

0.477

LOC107818956

0.476

LOC107763943

0.474

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107763943	LOC107793856	A0A1S3XDC1	A0A1S4A542	Receptor-like protein kinase.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.474
LOC107764338	LOC107793856	A0A1S3XES1	A0A1S4A542	Putative receptor-like protein kinase At3g47110.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.477
LOC107766900	LOC107793856	A0A1S3XN76	A0A1S4A542	LRR receptor-like serine/threonine-protein kinase FLS2.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.486
LOC107767678	LOC107793856	A0A1S3XQT7	A0A1S4A542	Probable LRR receptor-like serine/threonine-protein kinase At3g47570.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.499
LOC107773503	LOC107793856	A0A1S3Y8K0	A0A1S4A542	Probable LRR receptor-like serine/threonine-protein kinase At4g26540.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.486
LOC107775696	LOC107793856	A0A1S3YFW4	A0A1S4A542	Receptor-like protein 12.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.484
LOC107781362	LOC107793856	A0A1S3YZL5	A0A1S4A542	Leucine-rich repeat receptor-like protein kinase PEPR2.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.477
LOC107793856	LOC107763943	A0A1S4A542	A0A1S3XDC1	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Receptor-like protein kinase.	0.474
LOC107793856	LOC107764338	A0A1S4A542	A0A1S3XES1	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Putative receptor-like protein kinase At3g47110.	0.477
LOC107793856	LOC107766900	A0A1S4A542	A0A1S3XN76	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	LRR receptor-like serine/threonine-protein kinase FLS2.	0.486
LOC107793856	LOC107767678	A0A1S4A542	A0A1S3XQT7	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Probable LRR receptor-like serine/threonine-protein kinase At3g47570.	0.499
LOC107793856	LOC107773503	A0A1S4A542	A0A1S3Y8K0	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Probable LRR receptor-like serine/threonine-protein kinase At4g26540.	0.486
LOC107793856	LOC107775696	A0A1S4A542	A0A1S3YFW4	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Receptor-like protein 12.	0.484
LOC107793856	LOC107781362	A0A1S4A542	A0A1S3YZL5	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Leucine-rich repeat receptor-like protein kinase PEPR2.	0.477
LOC107793856	LOC107802067	A0A1S4A542	A0A1S4AWC5	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Leucine-rich repeat receptor-like protein kinase PXC2.	0.494
LOC107793856	LOC107818956	A0A1S4A542	A0A1S4CHN7	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Putative receptor-like protein kinase At3g47110.	0.476
LOC107793856	LOC107824456	A0A1S4A542	A0A1S4CZY2	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	Probable leucine-rich repeat receptor-like protein kinase At1g35710.	0.477
LOC107802067	LOC107793856	A0A1S4AWC5	A0A1S4A542	Leucine-rich repeat receptor-like protein kinase PXC2.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.494
LOC107818956	LOC107793856	A0A1S4CHN7	A0A1S4A542	Putative receptor-like protein kinase At3g47110.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.476
LOC107824456	LOC107793856	A0A1S4CZY2	A0A1S4A542	Probable leucine-rich repeat receptor-like protein kinase At1g35710.	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	0.477