STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107794328DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1143 aa)    
Predicted Functional Partners:
LOC107796188
Exosome complex component CSL4-like.
   
 0.985
LOC107807207
Exosome complex component CSL4-like.
   
 0.985
LOC107811570
Exosome complex component RRP45A-like.
   
 0.985
LOC107832334
Exosome complex component RRP45A-like.
   
 0.985
LOC107782269
Exosome complex component RRP42-like.
   
 0.984
LOC107801111
Exosome complex component RRP42-like.
   
 0.984
LOC107813495
Exosome complex component RRP43-like.
   
 0.984
LOC107817577
Exosome complex component RRP43-like.
   
 0.984
LOC107793734
Exosome complex exonuclease RRP46 homolog.
   
 0.983
LOC107802221
Exosome complex exonuclease RRP46 homolog.
   
 0.983
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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