STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107796746CCG-binding protein 1-like. (206 aa)    
Predicted Functional Partners:
LOC107811196
Uncharacterized protein LOC107811196.
  
   
 0.563
LOC107819812
Uncharacterized protein LOC107819812 isoform X1.
  
   
 0.554
LOC107774568
TATA box-binding protein-associated factor RNA polymerase I subunit B-like isoform X1.
      
 0.516
LOC107803844
TATA box-binding protein-associated factor RNA polymerase I subunit B-like isoform X1.
      
 0.516
LOC107804747
Trihelix transcription factor ASIL2-like.
  
     0.501
LOC107766467
F-box protein SKIP28-like.
      
 0.499
LOC107811541
F-box protein SKIP28-like.
      
 0.499
LOC107802338
Trihelix transcription factor ASIL2-like.
  
     0.490
LOC107831152
Agamous-like MADS-box protein AGL11.
  
     0.462
LOC107797335
Mediator of RNA polymerase II transcription subunit 9.
      
 0.450
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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