STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107796563Polygalacturonase-2-like. (457 aa)    
Predicted Functional Partners:
LOC107780493
Pectate lyase.
     
 0.817
LOC107820665
Pectate lyase.
     
 0.817
LOC107776790
Pectate lyase.
     
 0.791
LOC107792008
Pectate lyase.
     
 0.791
LOC107762739
Pectate lyase.
     
 0.733
LOC107769299
Pectate lyase.
     
 0.733
LOC107778084
Pectate lyase.
     
 0.733
LOC107785780
Pectate lyase.
     
 0.733
LOC107791654
Pectate lyase.
     
 0.733
LOC107793009
Pectate lyase.
     
 0.733
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.