LOC107796820 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107796820

Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like. (428 aa)

Predicted Functional Partners:

LOC107800616

0.704

LOC107814408

0.704

LOC107765225

0.514

LOC107778991

0.514

LOC107793979

0.514

LOC107825716

0.514

LOC107827692

0.514

LOC107799069

0.500

LOC107810474

0.500

LOC107813709

0.500

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107765225	LOC107796820	A0A1S3XI27	A0A1S4AEL1	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like.	0.514
LOC107765225	LOC107799069	A0A1S3XI27	A0A1S4ALM3	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107765225	LOC107800616	A0A1S3XI27	A0A1S4ARU0	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107765225	LOC107810474	A0A1S3XI27	A0A1S4BPD9	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107765225	LOC107813709	A0A1S3XI27	A0A1S4C0C1	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107765225	LOC107814408	A0A1S3XI27	A0A1S4C2D4	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107778991	LOC107796820	A0A1S3YRP3	A0A1S4AEL1	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like.	0.514
LOC107778991	LOC107799069	A0A1S3YRP3	A0A1S4ALM3	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107778991	LOC107800616	A0A1S3YRP3	A0A1S4ARU0	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107778991	LOC107810474	A0A1S3YRP3	A0A1S4BPD9	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107778991	LOC107813709	A0A1S3YRP3	A0A1S4C0C1	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107778991	LOC107814408	A0A1S3YRP3	A0A1S4C2D4	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107793979	LOC107796820	A0A1S4A5I5	A0A1S4AEL1	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like.	0.514
LOC107793979	LOC107799069	A0A1S4A5I5	A0A1S4ALM3	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107793979	LOC107800616	A0A1S4A5I5	A0A1S4ARU0	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107793979	LOC107810474	A0A1S4A5I5	A0A1S4BPD9	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107793979	LOC107813709	A0A1S4A5I5	A0A1S4C0C1	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	ubiquitin-40S ribosomal protein S27a-like.	0.738
LOC107793979	LOC107814408	A0A1S4A5I5	A0A1S4C2D4	Ubiquitin carboxyl-terminal hydrolase 27-like isoform X1; Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.730
LOC107796820	LOC107765225	A0A1S4AEL1	A0A1S3XI27	Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.514
LOC107796820	LOC107778991	A0A1S4AEL1	A0A1S3YRP3	Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like.	Ubiquitin carboxyl-terminal hydrolase 27-like; Belongs to the peptidase C19 family.	0.514