STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107797073F-box/WD-40 repeat-containing protein At3g52030-like isoform X1. (251 aa)    
Predicted Functional Partners:
LOC107772079
F-box/WD-40 repeat-containing protein At3g52030-like isoform X1.
  
  
 
0.543
LOC107767178
WD repeat-containing protein 82-like.
     
  0.540
LOC107781691
WD repeat-containing protein 82-like.
     
  0.540
LOC107781895
Protein RBL-like isoform X1.
     
  0.540
LOC107800485
WD repeat-containing protein 82-B-like.
     
  0.540
LOC107801645
COMPASS-like H3K4 histone methylase component WDR5A.
     
  0.540
LOC107810360
Uncharacterized protein LOC107810360.
     
  0.540
LOC107811301
WD repeat-containing protein 82-B-like.
     
  0.540
LOC107817105
Protein RBL-like isoform X1.
     
  0.540
LOC107818263
WD repeat-containing protein 82.
     
  0.540
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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