STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107797339Uncharacterized protein LOC107797339. (238 aa)    
Predicted Functional Partners:
LOC107817137
Putative F-box protein At3g10430.
  
     0.526
LOC107815385
Transcription factor ORG3-like.
  
     0.517
LOC107764033
G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300.
  
     0.509
LOC107793782
Protein LITTLE ZIPPER 1-like.
  
     0.506
LOC107829121
Uncharacterized protein LOC107829121.
  
     0.502
LOC107809392
Uncharacterized protein LOC107809392.
  
     0.500
LOC107762503
G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300.
  
     0.499
LOC107802125
Uncharacterized protein LOC107802125.
  
     0.493
LOC107795095
Protein LITTLE ZIPPER 1-like.
  
     0.492
LOC107776194
Uncharacterized protein LOC107776194.
  
     0.488
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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