STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107797518Protein transport protein Sec61 subunit gamma-1-like. (69 aa)    
Predicted Functional Partners:
LOC107763814
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.994
LOC107764466
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.994
LOC107802702
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.994
LOC107816002
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.994
LOC107786160
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
   
 0.971
LOC107792495
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
   
 0.971
LOC107804300
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
   
 0.971
LOC107828481
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
   
 0.971
LOC107778781
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.929
LOC107802919
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.929
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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