STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107797846dnaJ homolog subfamily C member 1-like isoform X1. (173 aa)    
Predicted Functional Partners:
LOC107822419
Splicing factor 3A subunit 2-like.
    
   0.798
LOC107814041
Nuclear inhibitor of protein phosphatase 1-like.
   
 
 0.639
LOC107822132
Nuclear inhibitor of protein phosphatase 1-like.
   
 
 0.639
LOC107774571
Serrate RNA effector molecule-like isoform X1.
   
 
  0.605
LOC107790573
Serrate RNA effector molecule-like isoform X1.
   
 
  0.605
LOC107766223
Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
      
 0.549
LOC107763094
RNA-binding protein 25-like isoform X1.
   
 
  0.540
LOC107767286
RNA-binding protein 25-like isoform X1.
   
 
  0.540
LOC107765024
Protein CWC15 homolog.
   
    0.465
LOC107783476
Protein CWC15 homolog.
   
    0.465
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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