STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10779981340S ribosomal protein S11-like; Belongs to the universal ribosomal protein uS17 family. (159 aa)    
Predicted Functional Partners:
LOC107815372
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.998
LOC107787568
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.998
LOC107795411
40S ribosomal protein S29-like.
  
 0.998
LOC107799618
40S ribosomal protein S28-like.
   
 0.998
LOC107800747
40S ribosomal protein S28.
   
 0.998
LOC107832143
40S ribosomal protein S29.
  
 0.998
LOC107780640
40S ribosomal protein S10-1-like.
   
 0.997
LOC107797139
40S ribosomal protein S10-like.
   
 0.997
LOC107829891
40S ribosomal protein S10-1-like.
   
 0.997
LOC107789702
Cytoplasmic ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 0.996
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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