STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107800039Metacaspase-9-like. (313 aa)    
Predicted Functional Partners:
LOC107762548
LOB domain-containing protein 15-like.
      
 0.533
LOC107786415
LOB domain-containing protein 15-like.
      
 0.533
LOC107805527
LOB domain-containing protein 15-like.
      
 0.533
LOC107814010
LOB domain-containing protein 15-like isoform X1.
      
 0.533
LOC107778912
Probable arabinosyltransferase ARAD1; Belongs to the glycosyltransferase 47 family.
      
 0.510
LOC107797171
Probable arabinosyltransferase ARAD1; Belongs to the glycosyltransferase 47 family.
      
 0.510
LOC107783297
Cathepsin B-like; Belongs to the peptidase C1 family.
      
 0.509
LOC107830480
Cathepsin B-like; Belongs to the peptidase C1 family.
      
 0.509
LOC107761701
Endonuclease 2-like isoform X1.
   
  
 0.505
LOC107780607
Endonuclease 2-like.
   
  
 0.505
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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