STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10780004114 kDa zinc-binding protein-like. (158 aa)    
Predicted Functional Partners:
LOC107762776
WAT1-related protein.
    
 0.723
LOC107784155
WAT1-related protein.
    
 0.723
LOC107809002
WAT1-related protein.
    
 0.723
LOC107797414
Histidine triad nucleotide-binding protein 3-like.
  
   
 0.705
LOC107761317
Cyclin-dependent kinase D-3-like; Belongs to the protein kinase superfamily.
    
 0.683
LOC107810174
Cyclin-dependent kinase D-3-like isoform X1; Belongs to the protein kinase superfamily.
    
 0.683
LOC107788649
Probable RNA polymerase II transcription factor B subunit 1-1.
     
 0.662
LOC107765382
TATA-box-binding protein.
    
 0.661
LOC107789091
TATA-box-binding protein isoform X1.
    
 0.661
LOC107789182
TATA-box-binding protein-like isoform X1.
    
 0.661
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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