STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107800412Probable aspartyl aminopeptidase; Belongs to the peptidase M18 family. (479 aa)    
Predicted Functional Partners:
LOC107804901
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.598
LOC107830896
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.598
LOC107781650
Patellin-3-like.
   
  
 0.537
LOC107806665
Patellin-3-like.
   
  
 0.537
LOC107784536
Protein PLASTID MOVEMENT IMPAIRED 1-like.
      
 0.536
LOC107797858
Protein PLASTID MOVEMENT IMPAIRED 1-like.
      
 0.536
LOC107768570
Leucine aminopeptidase 2, chloroplastic.
   
 
 0.535
LOC107801578
Leucine aminopeptidase 2, chloroplastic-like.
   
 
 0.535
LOC107782586
UNC93-like protein 1.
      
 0.533
LOC107818554
UNC93-like protein 1.
      
 0.533
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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