STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107801386Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (221 aa)    
Predicted Functional Partners:
LOC107781735
VAMP-like protein YKT61; Belongs to the synaptobrevin family.
    
 0.991
LOC107808971
VAMP-like protein YKT61; Belongs to the synaptobrevin family.
    
 0.991
LOC107815169
VAMP-like protein YKT61; Belongs to the synaptobrevin family.
    
 0.991
LOC107772469
Syntaxin-31-like; Belongs to the syntaxin family.
    
 0.989
LOC107780932
Syntaxin-32-like; Belongs to the syntaxin family.
    
 0.989
LOC107785920
Syntaxin-31-like isoform X1; Belongs to the syntaxin family.
    
 0.989
LOC107797504
Syntaxin-32-like; Belongs to the syntaxin family.
    
 0.989
LOC107759447
Membrin-11-like.
   
 0.982
LOC107769819
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.982
LOC107778968
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.982
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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