STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107802177Transcription factor TGA6-like. (236 aa)    
Predicted Functional Partners:
LOC107759263
Dehydration-responsive element-binding protein 2G-like.
      
 0.512
LOC107815200
Protein QUIRKY-like.
  
     0.429
LOC107804873
Uncharacterized protein LOC107804873.
  
     0.427
LOC107793356
Protein QUIRKY-like.
  
     0.426
LOC107774085
F-box/LRR-repeat protein 3-like.
  
     0.420
LOC107802882
F-box/LRR-repeat protein 3-like.
  
     0.417
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.