STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107802345Uncharacterized protein LOC107802345. (66 aa)    
Predicted Functional Partners:
LOC107820295
Probable protein phosphatase 2C 51.
      
 0.549
LOC107808624
KH domain-containing protein At4g18375-like isoform X1.
      
 0.545
LOC107811648
KH domain-containing protein At4g18375-like.
      
 0.545
LOC107822217
KH domain-containing protein At4g18375-like.
      
 0.545
LOC107831051
KH domain-containing protein At4g18375-like isoform X1.
      
 0.545
LOC107831610
Germinal center kinase 1-like isoform X1.
      
 0.540
LOC107831895
Germinal center kinase 1-like.
      
 0.540
LOC107760877
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.536
LOC107797884
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.536
LOC107800385
Uncharacterized protein LOC107800385.
  
     0.447
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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