STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107802748Serine/threonine-protein kinase EDR1 isoform X1. (906 aa)    
Predicted Functional Partners:
LOC107790640
DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.
    
 0.579
LOC107827612
DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.
    
 0.579
LOC107817349
Tetratricopeptide repeat protein 1-like isoform X1.
      
 0.547
LOC107818325
Tetratricopeptide repeat protein 1-like isoform X1.
      
 0.547
LOC107821407
Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.
      
 0.505
LOC107774036
Auxin transporter-like protein 3.
    
 0.476
LOC107803487
Serine/threonine-protein kinase ATG1t-like; Belongs to the protein kinase superfamily.
  
 
 
0.449
ATG1c
Serine/threonine-protein kinase ATG1t-like.
  
 
 
0.445
LOC107804758
Peptidylprolyl isomerase.
    
 0.439
LOC107826930
Peptidylprolyl isomerase.
    
 0.439
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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