STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107803724Xylose isomerase. (481 aa)    
Predicted Functional Partners:
LOC107761269
Xylulose kinase-like.
  
 
 0.989
LOC107797064
Xylulose kinase-like isoform X1.
  
 
 0.989
LOC107800890
Xylulose kinase-like.
  
 
 0.989
LOC107800888
Xylulose kinase-like isoform X1.
  
 
 0.989
LOC107773322
Sorbitol dehydrogenase.
     
 0.949
LOC107791051
Sorbitol dehydrogenase-like.
     
 0.949
LOC107788914
L-idonate 5-dehydrogenase-like isoform X1.
     
 0.941
LOC107798737
L-idonate 5-dehydrogenase-like isoform X1.
     
 0.941
LOC107828739
Probable fructokinase-7; Belongs to the carbohydrate kinase PfkB family.
    
 0.926
LOC107778295
Probable fructokinase-6, chloroplastic; Belongs to the carbohydrate kinase PfkB family.
    
 0.926
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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