STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107804510Dof zinc finger protein DOF3.4-like. (245 aa)    
Predicted Functional Partners:
LOC107802518
Probable WRKY transcription factor 50.
      
 0.539
LOC107783938
Basic leucine zipper 43-like.
  
   
 0.494
LOC107781225
Ethylene-responsive transcription factor ABI4-like.
  
   
 0.484
LOC107797931
Ethylene-responsive transcription factor ERF054-like.
  
     0.473
NtERF#116
Ethylene-responsive transcription factor 12-like.
  
    0.464
LOC107784356
Ethylene-responsive transcription factor ERF014-like.
  
     0.462
LOC107809635
Ethylene-responsive transcription factor ERF021-like.
  
     0.460
LOC107774538
Ethylene-responsive transcription factor 12-like.
  
    0.457
LOC107793161
Ethylene-responsive transcription factor ERF061-like.
  
     0.453
LOC107794689
Ethylene-responsive transcription factor ERF061-like.
  
     0.452
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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