STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107804749Nucleolin-like isoform X1. (788 aa)    
Predicted Functional Partners:
LOC107781187
Heterogeneous nuclear ribonucleoprotein H2-like isoform X1.
   
 0.613
LOC107800593
Heterogeneous nuclear ribonucleoprotein H2-like isoform X1.
   
 0.613
LOC107761846
E3 ubiquitin-protein ligase RKP.
   
 0.545
LOC107816575
E3 ubiquitin-protein ligase RKP-like.
   
 0.545
LOC107781939
Heterogeneous nuclear ribonucleoprotein U-like protein 1.
   
 0.487
LOC107811823
Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1.
   
 0.487
LOC107807683
Nuclear cap-binding protein subunit 1-like.
   
  0.479
LOC107827611
Nuclear cap-binding protein subunit 1 isoform X1.
   
  0.479
NitaCp079
Uncharacterized protein.
   
 
 0.462
ycf1
Protein TIC 214.
   
 
 0.462
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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