STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107804695RNA polymerase sigma factor sigA-like. (508 aa)    
Predicted Functional Partners:
LOC107770258
DNA-directed RNA polymerases II, IV and V subunit 6A-like isoform X1.
   
 
 0.920
NT193
DNA-directed RNA polymerases II and V subunit 6B-like.
   
 
 0.920
LOC107775895
DNA-directed RNA polymerases I and III subunit rpac1-like isoform X1.
  
 
 0.810
LOC107779700
DNA-directed RNA polymerase II subunit RPB3-like.
  
 
 0.810
LOC107787692
DNA-directed RNA polymerases I and III subunit rpac1-like isoform X1.
  
 
 0.810
LOC107789704
DNA-directed RNA polymerases II, IV and V subunit 3-like.
  
 
 0.810
LOC107832026
DNA-directed RNA polymerases II, IV and V subunit 3-like.
  
 
 0.810
rpoC2
RNA polymerase beta'' subunit.
  
 
 0.725
rpoC1
DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.
  
 
 0.725
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.725
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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