LOC107805473 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107805473

Uncharacterized protein LOC107805473 isoform X1. (471 aa)

Predicted Functional Partners:

LOC107828207

0.521

LOC107811521

0.502

LOC107768152

0.497

LOC107773419

0.495

LOC107830501

0.484

LOC107816586

0.476

LOC107803433

0.475

LOC107812768

0.467

LOC107795020

0.466

LOC107827975

0.465

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107768152	LOC107803433	A0A1S3XS89	A0A1S4B120	Uncharacterized protein LOC107768152.	Mitogen-activated protein kinase kinase kinase 7-like.	0.509
LOC107768152	LOC107805473	A0A1S3XS89	A0A1S4B833	Uncharacterized protein LOC107768152.	Uncharacterized protein LOC107805473 isoform X1.	0.497
LOC107768152	LOC107811521	A0A1S3XS89	A0A1S4BSV8	Uncharacterized protein LOC107768152.	Uncharacterized protein LOC107811521.	0.464
LOC107768152	LOC107816586	A0A1S3XS89	A0A1S4C9L0	Uncharacterized protein LOC107768152.	Mitogen-activated protein kinase kinase kinase 7-like.	0.509
LOC107768152	LOC107828207	A0A1S3XS89	A0A1S4DC07	Uncharacterized protein LOC107768152.	Uncharacterized protein LOC107828207 isoform X1.	0.445
LOC107768152	LOC107830501	A0A1S3XS89	A0A1S4DJJ0	Uncharacterized protein LOC107768152.	Uncharacterized protein LOC107830501.	0.421
LOC107773419	LOC107803433	A0A1S3Y806	A0A1S4B120	Uncharacterized protein LOC107773419.	Mitogen-activated protein kinase kinase kinase 7-like.	0.509
LOC107773419	LOC107805473	A0A1S3Y806	A0A1S4B833	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107805473 isoform X1.	0.495
LOC107773419	LOC107811521	A0A1S3Y806	A0A1S4BSV8	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107811521.	0.470
LOC107773419	LOC107816586	A0A1S3Y806	A0A1S4C9L0	Uncharacterized protein LOC107773419.	Mitogen-activated protein kinase kinase kinase 7-like.	0.509
LOC107773419	LOC107828207	A0A1S3Y806	A0A1S4DC07	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107828207 isoform X1.	0.451
LOC107773419	LOC107830501	A0A1S3Y806	A0A1S4DJJ0	Uncharacterized protein LOC107773419.	Uncharacterized protein LOC107830501.	0.416
LOC107795020	LOC107803433	A0A1S4A8U8	A0A1S4B120	Uncharacterized protein LOC107795020.	Mitogen-activated protein kinase kinase kinase 7-like.	0.516
LOC107795020	LOC107805473	A0A1S4A8U8	A0A1S4B833	Uncharacterized protein LOC107795020.	Uncharacterized protein LOC107805473 isoform X1.	0.466
LOC107795020	LOC107811521	A0A1S4A8U8	A0A1S4BSV8	Uncharacterized protein LOC107795020.	Uncharacterized protein LOC107811521.	0.453
LOC107795020	LOC107816586	A0A1S4A8U8	A0A1S4C9L0	Uncharacterized protein LOC107795020.	Mitogen-activated protein kinase kinase kinase 7-like.	0.517
LOC107795020	LOC107828207	A0A1S4A8U8	A0A1S4DC07	Uncharacterized protein LOC107795020.	Uncharacterized protein LOC107828207 isoform X1.	0.416
LOC107795020	LOC107830501	A0A1S4A8U8	A0A1S4DJJ0	Uncharacterized protein LOC107795020.	Uncharacterized protein LOC107830501.	0.448
LOC107803433	LOC107768152	A0A1S4B120	A0A1S3XS89	Mitogen-activated protein kinase kinase kinase 7-like.	Uncharacterized protein LOC107768152.	0.509
LOC107803433	LOC107773419	A0A1S4B120	A0A1S3Y806	Mitogen-activated protein kinase kinase kinase 7-like.	Uncharacterized protein LOC107773419.	0.509