STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107807301L10-interacting MYB domain-containing protein-like. (326 aa)    
Predicted Functional Partners:
LOC107813495
Exosome complex component RRP43-like.
    
  0.599
LOC107817577
Exosome complex component RRP43-like.
    
  0.599
LOC107808596
mRNA-decapping enzyme subunit 2-like.
   
 0.545
LOC107821870
mRNA-decapping enzyme subunit 2-like.
   
 0.545
LOC107796614
D-aminoacyl-tRNA deacylase-like isoform X1.
    
 0.520
LOC107796630
D-aminoacyl-tRNA deacylase-like isoform X1.
    
 0.520
LOC107817109
D-aminoacyl-tRNA deacylase-like.
    
 0.520
LOC107832106
D-aminoacyl-tRNA deacylase-like.
    
 0.520
LOC107762422
50S ribosomal protein L10, chloroplastic-like.
      
 0.479
LOC107763454
50S ribosomal protein L10, chloroplastic.
      
 0.479
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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