STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107807679Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (299 aa)    
Predicted Functional Partners:
LOC107826883
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.668
LOC107829646
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.668
LOC107795417
Vacuolar protein sorting-associated protein 26A.
    
 
 0.664
LOC107828108
Vacuolar protein sorting-associated protein 26A-like.
    
 
 0.664
LOC107787720
Photosystem II stability/assembly factor HCF136, chloroplastic-like isoform X1.
    
 0.480
LOC107830733
Photosystem II stability/assembly factor HCF136, chloroplastic-like.
    
 0.480
LOC107803266
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.467
LOC107831473
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.467
LOC107778361
Uncharacterized protein LOC107778361; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  
 0.445
LOC107811659
O-acyltransferase WSD1-like.
     
 0.407
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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