STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107808434Uncharacterized protein LOC107808434. (243 aa)    
Predicted Functional Partners:
LOC107790726
Uncharacterized protein LOC107790726.
  
 
   0.933
LOC107819732
50S ribosomal protein L17-like; Belongs to the bacterial ribosomal protein bL17 family.
    
   0.909
LOC107765301
54S ribosomal protein L51, mitochondrial-like isoform X1.
    
   0.878
LOC107774613
50S ribosomal protein L9-like.
    
   0.878
LOC107783837
50S ribosomal protein HLP, mitochondrial-like; Belongs to the universal ribosomal protein uL14 family.
    
   0.878
LOC107789461
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.878
LOC107795949
50S ribosomal protein L15 isoform X1.
    
   0.878
LOC107796434
50S ribosomal protein HLP, mitochondrial-like; Belongs to the universal ribosomal protein uL14 family.
    
   0.878
LOC107801585
50S ribosomal protein L13-like.
    
   0.878
LOC107802091
50S ribosomal protein L19-like.
    
   0.878
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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