STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107808536Tetraspanin-8-like; Belongs to the tetraspanin (TM4SF) family. (266 aa)    
Predicted Functional Partners:
LOC107807995
LOB domain-containing protein 12-like.
  
     0.535
LOC107813236
LOB domain-containing protein 12-like.
  
     0.535
LOC107832246
LOB domain-containing protein 12-like.
  
     0.534
LOC107761327
LOB domain-containing protein 12-like.
  
     0.533
LOC107763324
LOB domain-containing protein 12-like.
  
     0.530
LOC107776489
Protein SPIRAL1-like 1.
  
    0.523
LOC107807701
Putative expansin-B2.
  
 
   0.523
LOC107827606
Uncharacterized protein LOC107827606.
  
     0.523
LOC107783493
Uncharacterized protein At1g04910-like.
  
     0.513
LOC107824151
Uncharacterized protein At1g04910-like.
  
     0.513
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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