STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107808992D-lactate dehydrogenase [cytochrome], mitochondrial-like. (536 aa)    
Predicted Functional Partners:
LOC107812374
Hydroxyacylglutathione hydrolase cytoplasmic-like.
    
 0.949
LOC107828289
Hydroxyacylglutathione hydrolase cytoplasmic.
    
 0.949
LOC107763231
Probable hydroxyacylglutathione hydrolase 2, chloroplastic.
    
 0.937
LOC107784170
Probable hydroxyacylglutathione hydrolase 2, chloroplastic.
    
 0.937
LOC107831370
Hydroxyacylglutathione hydrolase 1, mitochondrial-like.
    
 0.937
LOC107806030
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 
 0.919
LOC107764593
L-lactate dehydrogenase-like.
   
 
 0.919
LOC107780728
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 
 0.919
LOC107803141
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 
 0.919
LOC107775826
Malic enzyme.
  
 
 0.911
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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