STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107809803Riboflavin biosynthesis protein PYRD, chloroplastic-like. (436 aa)    
Predicted Functional Partners:
LOC107792734
Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like.
 
  
 0.955
LOC107831087
Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like.
 
  
 0.955
LOC107780053
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
 
  
 0.928
LOC107789601
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
 
  
 0.928
LOC107789772
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
 
  
 0.928
LOC107809151
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
 
  
 0.928
LOC107780073
Riboflavin biosynthesis protein PYRR, chloroplastic.
  
  
0.926
LOC107825400
Riboflavin biosynthesis protein PYRR, chloroplastic-like.
  
  
0.925
LOC107761659
Uncharacterized protein LOC107761659.
     
 0.911
LOC107798364
Uncharacterized protein LOC107798364.
     
 0.911
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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