STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107809868Coilin-like isoform X1. (461 aa)    
Predicted Functional Partners:
LOC107779915
Monodehydroascorbate reductase.
   
  
 0.760
LOC107769845
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
      
 0.640
LOC107821218
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
      
 0.640
LOC107794273
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
    
 
 0.608
LOC107791833
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
      
 0.561
LOC107811573
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
      
 0.561
LOC107818988
Protein TRANSPORT INHIBITOR RESPONSE 1-like.
      
 0.561
LOC107783187
Endonuclease 1-like.
    
 
 0.556
LOC107811281
Endonuclease 1-like.
    
 
 0.556
LOC107832241
Caltractin-like isoform X1.
    
 0.556
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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