LOC107809995 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107809995

Calcineurin subunit B-like. (175 aa)

Predicted Functional Partners:

CIP3

0.699

LOC107831294

0.699

LOC107771889

0.621

LOC107778555

0.621

LOC107789043

0.585

LOC107781198

0.552

LOC107817895

0.552

LOC107798423

0.510

LOC107797970

0.443

LOC107766309

0.414

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIP3	LOC107809995	A0A075F2H1	A0A1S4BMT4	Peptidylprolyl isomerase.	Calcineurin subunit B-like.	0.699
LOC107766309	LOC107771889	A0A1S3XLL4	A0A1S3Y4P0	Ankyrin repeat domain-containing protein 29.	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.943
LOC107766309	LOC107778555	A0A1S3XLL4	A0A1S3YQS0	Ankyrin repeat domain-containing protein 29.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.943
LOC107766309	LOC107789043	A0A1S3XLL4	A0A1S3ZP38	Ankyrin repeat domain-containing protein 29.	Ankyrin-3-like isoform X1.	0.469
LOC107766309	LOC107809995	A0A1S3XLL4	A0A1S4BMT4	Ankyrin repeat domain-containing protein 29.	Calcineurin subunit B-like.	0.414
LOC107771889	LOC107766309	A0A1S3Y4P0	A0A1S3XLL4	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Ankyrin repeat domain-containing protein 29.	0.943
LOC107771889	LOC107778555	A0A1S3Y4P0	A0A1S3YQS0	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
LOC107771889	LOC107789043	A0A1S3Y4P0	A0A1S3ZP38	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Ankyrin-3-like isoform X1.	0.682
LOC107771889	LOC107809995	A0A1S3Y4P0	A0A1S4BMT4	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Calcineurin subunit B-like.	0.621
LOC107778555	LOC107766309	A0A1S3YQS0	A0A1S3XLL4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Ankyrin repeat domain-containing protein 29.	0.943
LOC107778555	LOC107771889	A0A1S3YQS0	A0A1S3Y4P0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.543
LOC107778555	LOC107789043	A0A1S3YQS0	A0A1S3ZP38	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Ankyrin-3-like isoform X1.	0.682
LOC107778555	LOC107809995	A0A1S3YQS0	A0A1S4BMT4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Calcineurin subunit B-like.	0.621
LOC107781198	LOC107809995	A0A1S3YZ40	A0A1S4BMT4	DNA repair protein RAD4-like.	Calcineurin subunit B-like.	0.552
LOC107781198	LOC107817895	A0A1S3YZ40	A0A1S4CDQ2	DNA repair protein RAD4-like.	DNA repair protein RAD4-like isoform X1.	0.900
LOC107789043	LOC107766309	A0A1S3ZP38	A0A1S3XLL4	Ankyrin-3-like isoform X1.	Ankyrin repeat domain-containing protein 29.	0.469
LOC107789043	LOC107771889	A0A1S3ZP38	A0A1S3Y4P0	Ankyrin-3-like isoform X1.	Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.682
LOC107789043	LOC107778555	A0A1S3ZP38	A0A1S3YQS0	Ankyrin-3-like isoform X1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.682
LOC107789043	LOC107809995	A0A1S3ZP38	A0A1S4BMT4	Ankyrin-3-like isoform X1.	Calcineurin subunit B-like.	0.585
LOC107797970	LOC107798423	A0A1S4AID5	A0A1S4AJM2	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like.	Protein LIM1-like.	0.584