STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107810342Uncharacterized protein At4g22758-like. (131 aa)    
Predicted Functional Partners:
LOC107763631
Probable WRKY transcription factor 38 isoform X1.
  
     0.472
LOC107777031
Patellin-4-like.
  
     0.463
LOC107816893
Cysteine proteinase inhibitor 5-like.
  
    0.453
LOC107760022
Uncharacterized protein LOC107760022.
  
     0.446
LOC107774270
UDP-glycosyltransferase 73D1-like.
  
     0.442
LOC107771287
Agamous-like MADS-box protein AGL62.
  
     0.439
LOC107780736
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
 
   0.435
LOC107802845
Uncharacterized protein LOC107802845.
  
     0.435
LOC107813154
Gibberellin-regulated protein 1-like isoform X1.
  
     0.433
LOC107793236
Peamaclein-like.
  
     0.431
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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