STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107810500Polyphenol oxidase, chloroplastic-like. (620 aa)    
Predicted Functional Partners:
LOC107786762
Phenylalanine ammonia-lyase.
   
  
 0.673
LOC107792668
Phenylalanine ammonia-lyase.
   
  
 0.673
PALA
Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.
   
  
 0.673
LOC107802063
Phenylalanine ammonia-lyase.
   
  
 0.672
LOC107820497
Phenylalanine ammonia-lyase.
   
  
 0.672
LOC107831213
Phenylalanine ammonia-lyase.
   
  
 0.672
NtPAL
Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton; Belongs to the PAL/histidase family.
   
  
 0.672
LOC107773093
Polyphenol oxidase E, chloroplastic-like.
  
  
 
0.666
LOC107787563
Polyphenol oxidase E, chloroplastic-like.
  
  
 
0.666
LOC107789348
Polyphenol oxidase E, chloroplastic-like isoform X1.
  
  
 
0.666
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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