STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107811010UPF0481 protein At3g47200-like. (519 aa)    
Predicted Functional Partners:
LOC107804885
Uncharacterized protein LOC107804885 isoform X1.
  
     0.541
LOC107793023
Uncharacterized protein LOC107793023.
  
     0.539
LOC107803480
Uncharacterized protein LOC107803480 isoform X1.
  
     0.538
LOC107800554
Uncharacterized protein LOC107800554.
  
     0.537
LOC107818450
Uncharacterized protein LOC107818450.
  
     0.537
LOC107781499
Uncharacterized protein LOC107781499 isoform X1.
  
     0.535
LOC107761966
Uncharacterized protein LOC107761966.
  
     0.534
LOC107784078
FBD-associated F-box protein At5g56370-like isoform X1.
  
     0.534
LOC107826475
Agamous-like MADS-box protein AGL29.
  
     0.533
LOC107781203
Pectinesterase inhibitor-like.
  
     0.531
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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