STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107810988Calmodulin-binding protein 60 D-like. (628 aa)    
Predicted Functional Partners:
LOC107799432
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.694
LOC107828406
Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like.
  
 
  0.536
LOC107772735
Uncharacterized protein At1g04910-like.
  
     0.532
LOC107795713
Protein NLP7-like.
  
    0.531
LOC107829991
Uncharacterized protein At1g04910-like.
  
     0.530
LOC107773966
Uncharacterized protein LOC107773966.
  
     0.528
LOC107795875
Protein STRUBBELIG-RECEPTOR FAMILY 3-like.
  
  
  0.523
LOC107824856
SH3 domain-containing protein 2-like.
  
 
  0.522
LOC107771955
Uncharacterized protein LOC107771955 isoform X1.
  
     0.521
LOC107781068
Uncharacterized protein LOC107781068.
  
     0.521
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.