STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107812106Myb-related protein 308-like. (264 aa)    
Predicted Functional Partners:
LOC107780880
TIMELESS-interacting protein-like; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
      
 0.759
LOC107821293
Chromosome segregation in meiosis protein 3-like; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
      
 0.759
LOC107804431
ervatamin-B-like; Belongs to the peptidase C1 family.
   
  
 0.756
LOC107807137
ervatamin-B-like; Belongs to the peptidase C1 family.
   
  
 0.756
LOC107761452
E3 ubiquitin-protein ligase SINAT5-like.
      
 0.751
LOC107772979
CDPK-related kinase 5 isoform X1.
      
 0.751
LOC107784733
E3 ubiquitin-protein ligase SINAT5-like.
      
 0.751
LOC107786948
E3 ubiquitin-protein ligase SINAT5-like.
      
 0.751
LOC107787565
E3 ubiquitin-protein ligase SINAT5-like.
      
 0.751
LOC107807857
E3 ubiquitin-protein ligase SINAT5-like isoform X1.
      
 0.751
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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