STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107812191Pentatricopeptide repeat-containing protein At1g73710-like. (1029 aa)    
Predicted Functional Partners:
LOC107771441
Peroxisomal membrane protein PEX14-like.
  
     0.491
LOC107770010
Uncharacterized protein LOC107770010.
  
     0.482
LOC107791690
F-box/FBD/LRR-repeat protein At1g13570-like.
  
     0.475
LOC107816470
Uncharacterized protein LOC107816470.
  
     0.468
LOC107812564
Uncharacterized protein LOC107812564.
  
     0.466
LOC107799838
Uncharacterized protein LOC107799838.
  
     0.461
LOC107797690
Uncharacterized protein LOC107797690.
  
     0.457
LOC107785632
Egg cell-secreted protein 1.4-like.
  
     0.454
LOC107828980
BAG family molecular chaperone regulator 7-like.
  
     0.453
LOC107773186
Uncharacterized protein LOC107773186.
  
     0.450
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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