STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107812476Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic-like. (381 aa)    
Predicted Functional Partners:
LOC107791195
Glycerophosphodiester phosphodiesterase GDPD6-like.
     
 0.912
LOC107826889
Glycerophosphodiester phosphodiesterase GDPD6-like isoform X1.
     
 0.912
LOC107783429
Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic-like.
  
  
 
0.902
LOC107795620
Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic-like.
  
  
 
0.902
LOC107763020
Glycerophosphodiester phosphodiesterase GDPD3-like.
  
  
 
0.900
LOC107787799
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.794
LOC107806864
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.794
LOC107758966
Acyl-protein thioesterase 2-like isoform X1.
    
 0.765
LOC107767006
Acyl-protein thioesterase 2-like.
    
 0.765
LOC107772090
Acyl-protein thioesterase 2-like.
    
 0.765
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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