STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107813697Dynamin-related protein 4C-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (683 aa)    
Predicted Functional Partners:
LOC107806591
Uncharacterized protein LOC107806591.
  
   
 0.518
LOC107808272
Uncharacterized protein LOC107808272.
  
   
 0.516
LOC107768670
Tobamovirus multiplication protein 2B-like.
  
   
 0.464
LOC107781400
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.451
LOC107811153
Mitochondrial import receptor subunit TOM7-1-like.
  
     0.449
LOC107783167
Mitochondrial import receptor subunit TOM7-1-like.
  
     0.448
LOC107795240
Mitochondrial import receptor subunit TOM7-1.
  
     0.445
LOC107802009
Classical arabinogalactan protein 4-like.
  
 
  0.439
LOC107766807
Copper-transporting ATPase RAN1-like isoform X1.
      
 0.434
LOC107768661
Copper-transporting ATPase RAN1-like isoform X1.
      
 0.434
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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